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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        Tool Citations

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        To help with this, you can download publication details of the tools mentioned in this report:

        About MultiQC

        This report was generated using MultiQC, version 1.21

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-03-14, 16:08 SAST based on data in:

        Welcome! Not sure where to start?   Watch a tutorial video   (6:06)

        General Statistics

        Showing 5/5 rows and 5/7 columns.
        Sample Name
        % Duplication
        M Reads After Filtering
        GC content
        % PF
        % Adapter
        SRR8364253
        1.0%
        4.0M
        47.6%
        99.0%
        1.1%
        SRR8364260
        0.2%
        1.3M
        47.5%
        98.0%
        0.4%
        SRR8364364
        0.0%
        3.0M
        46.5%
        99.0%
        74.0%
        SRR8364370
        1.0%
        3.5M
        46.8%
        98.3%
        6.8%
        SRR8364373
        0.3%
        1.5M
        47.6%
        99.2%
        0.2%

        fastp

        Version: 0.23.4

        fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).DOI: 10.1093/bioinformatics/bty560.

        Filtered Reads

        Filtering statistics of sampled reads.

        00.5M1M1.5M2M2.5M3M3.5M4MSRR8364373SRR8364370SRR8364364SRR8364260SRR8364253
        Passed FilterLow QualityToo Many NToo ShortToo LongFastp: Filtered Reads# Reads
        Created with MultiQC

        Insert Sizes

        Insert size estimation of sampled reads.

        501001502002503003504004500%0.1%0.2%0.3%0.4%0.5%0.6%
        Fastp: Insert Size DistributionInsert sizeRead percent
        Created with MultiQC

        Sequence Quality

        Average sequencing quality over each base of all reads.

        5010015020025005101520253035
        Fastp: Sequence QualityRead PositionR1 Before filtering: Sequence Quality
        Created with MultiQC

        GC Content

        Average GC content over each base of all reads.

        501001502002500%20%40%60%80%100%
        Fastp: Read GC ContentRead PositionR1 Before filtering: Base Content Percent
        Created with MultiQC

        N content

        Average N content over each base of all reads.

        501001502002500%20%40%60%80%100%
        Fastp: Read N ContentRead PositionR1 Before filtering: Base Content Percent
        Created with MultiQC

        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        SoftwareVersion
        fastp0.23.4

        MultiQC v1.21 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.